Index _ | A | B | C | D | I | M | N | O | P | S | Z _ __init__() (aind_zarr_utils.origin.Origin method) A aind_zarr_utils.annotations module aind_zarr_utils.image module aind_zarr_utils.neuroglancer module aind_zarr_utils.origin module aind_zarr_utils.pipeline_domain_selector module aind_zarr_utils.pipeline_transformed module aind_zarr_utils.zarr module annotation_indices_to_anatomical() (in module aind_zarr_utils.annotations) annotations_and_descriptions_to_dict() (in module aind_zarr_utils.annotations) apply_pipeline_overlays() (in module aind_zarr_utils.image) apply_pipeline_overlays_to_ants() (in module aind_zarr_utils.pipeline_transformed) apply_pipeline_overlays_to_sitk() (in module aind_zarr_utils.pipeline_transformed) at() (aind_zarr_utils.origin.Origin class method) at_corner() (aind_zarr_utils.origin.Origin class method) B base_and_pipeline_anatomical_stub() (in module aind_zarr_utils.pipeline_transformed) base_and_pipeline_zarr_to_ants() (in module aind_zarr_utils.pipeline_transformed) base_and_pipeline_zarr_to_sitk() (in module aind_zarr_utils.pipeline_transformed) C ccf_to_indices() (in module aind_zarr_utils.pipeline_transformed) ccf_to_indices_auto_metadata() (in module aind_zarr_utils.pipeline_transformed) corner_code (aind_zarr_utils.origin.Origin attribute) corner_lps (aind_zarr_utils.origin.Origin attribute) D default() (aind_zarr_utils.origin.Origin class method) I indices_to_ccf() (in module aind_zarr_utils.pipeline_transformed) indices_to_ccf_auto_metadata() (in module aind_zarr_utils.pipeline_transformed) M mimic_pipeline_zarr_to_anatomical_stub() (in module aind_zarr_utils.pipeline_transformed) mimic_pipeline_zarr_to_ants() (in module aind_zarr_utils.pipeline_transformed) mimic_pipeline_zarr_to_sitk() (in module aind_zarr_utils.pipeline_transformed) module aind_zarr_utils.annotations aind_zarr_utils.image aind_zarr_utils.neuroglancer aind_zarr_utils.origin aind_zarr_utils.pipeline_domain_selector aind_zarr_utils.pipeline_transformed aind_zarr_utils.zarr N neuroglancer_to_ccf() (in module aind_zarr_utils.pipeline_transformed) neuroglancer_to_ccf_auto_metadata() (in module aind_zarr_utils.pipeline_transformed) O Origin (class in aind_zarr_utils.origin) P point (aind_zarr_utils.origin.Origin attribute) S scaled_points_to_indices() (in module aind_zarr_utils.zarr) swc_data_to_ccf() (in module aind_zarr_utils.pipeline_transformed) swc_data_to_ccf_auto_metadata() (in module aind_zarr_utils.pipeline_transformed) swc_data_to_zarr_indices() (in module aind_zarr_utils.pipeline_transformed) Z zarr_to_ants() (in module aind_zarr_utils.zarr) zarr_to_sitk() (in module aind_zarr_utils.zarr) zarr_to_sitk_stub() (in module aind_zarr_utils.zarr)